Sample getchromsizes fastqc perl python gunzip rsem star trimgalore cutadapt nf-core/rnaseq Nextflow CUSTOM_GETCHROMSIZES 1.2 FASTQC 0.12.1 GTF2BED 5.26.2 GTF_FILTER 3.9.5 GUNZIP_FASTA 1.9 GUNZIP_GTF 1.9 MAKE_TRANSCRIPTS_FASTA 1.3.1 2.7.10a TRIMGALORE 0.6.7 3.4 Workflow v3.15.1-g4053b2e 24.04.4